Publications

Research reports

2023

Wallis & Futuna Community Marine Monitoring Toolkit

Johanna Johnson, David Welch, Mari-Carmen Pineda, Baptiste Jaugeon and Savelina Taiava.]

Boîte à outils pour le suivi communautaire du milieu marin de Wallis-et-Futuna : Guide de l’animateur pour la mise en oeuvre d’un suivi local en appui d’une gestion locale.

2021

Johanna Johnson, David Welch, Emma Kabua-Tibon, Benedict Yamamura, Florence Edwards]

Marshall Islands Community Marine Monitoring Toolkit

2023

Report produced by the Australia Pacific Climate Partnership (APCP) for a collaborative project with the Fiji Ministry of Agriculture.

Johanna Johnson, Hannah Barrowman and Poasa Nauluvula]

Fiji taro climate-smart demonstration farms

2021

Report prepared for the Arafura and Timor Seas Ecosystem Action Phase 2 (ATSEA-2) Project.

Johanna Johnson, David J. Welch, Ruben van Hooidonk & Dieter Tracey]

Assessing the vulnerability of the Arafura and Timor Seas marine region to climate change

2022

Report prepared by C2O Pacific for The Arafura and Timor Seas Ecosystem Action Phase 2 (ATSEA-2) Project.

Johnson JE, Welch, DJ, Tracey D, Susanto H, Tania C, Triani D]

Guide for Facilitators & Decision-makers: Incorporating regional climate change results into local action planning

2021

Report prepared for the Cook Islands Ridge to Reef project

Johnson JE, Ceccarelli D and Smith A]

Outlook Report 2021 for Marae Moana (Cook Islands Marine Park)

2021

Bahri T, Vasconcellos M, Welch D, Johnson J, Perry I, Ma X and Sharma R (Eds)]

Adaptive management of fisheries in response to climate change

2020

Jones R, Fisher R, Francis D, Klonowski W, Luter H, Negri A, Pineda MC, Ricardo G, Slivkoff M and Whinney J]

Risk Assessing Dredging Activities in Shallow-Water Mesophotic Reefs

2019

Brodie J, Johnson JE, Waterhouse J and Erdmann S]

Wastewater Pollution and Coral Reefs: Supporting Science

2019

Maynard JA, Gove J, Tracey D, Johnson JE, Lecky J, Conklin E, van Hooidonk R, Donovan M, Hospital J, Kleiber D, Brainard R, Williams I, Swanson D, Oliver T, Walsh W, Wiggins C and Kramer l]

Coral Reefs Vulnerability to Climate Change in West Hawai‘i. NOAA, Hawaii

2018

Johnson JE, Welch DJ, Hooper E, Moore B, Edney G and Waterhouse J]

Community Marine Monitoring Toolkit: Vanuatu

2018

Bell JD, Allain V, Sen Gupta A, Johnson JE, Hampton J, Hobday AJ, Lehodey P, Lenton A, Moore BR, Pratchett MS, Senina I, Smith N and Williams P]

Climate change impacts, vulnerabilities and adaptations: Western and Central Pacific Ocean marine fisheries

2018

Lefale P, Diamond H, Anderson C, Lenton A, Matear R, Mongin M, Aucan J, Sutton P, Dutra L, Haywood M, Ferreir M, Singh SS, Piovano S, Johnson J et al]

Pacific Marine Climate Change Report Card

2018

Waterhouse J, Petus C, Brodie J, Bainbridge S, Wolanski E, Dafforn KA, Birrer SC, Lough J, Tracey D, Johnson JE, Chariton AC, Johnston EL, Li Y, Martins F and O’Brien D]

Identifying water quality and ecosystem health threats to the Torres Strait and Far Northern GBR from runoff of the Fly River

2018

Johnson JE, Welch DJ, Marshall PA, Day J, Marshall N, Steinberg CR, Benthuysen JA, Sun C, Brodie J, Marsh, H, Hamann M and Simpfendorfer C]

Characterising the values and connectivity of the northeast Australia seascape: Great Barrier Reef, Torres Strait, Coral Sea and Great Sandy Strait.

2017

https://nesptropical.edu.au/wp-content/uploads/2020/06/NESP-TWQ-Project-2.1.2-Final-Report.pdf

Waltham NJ, Wegscheidl CJ, Smart JCR, Volders A, Hasan S and Waterhouse J]

Scoping land conversion options for high DIN risk, low-lying sugarcane, to alternative use for water quality improvement in Wet Tropics catchments

2017

Waterhouse J, Schaffelke B, Bartley R, Eberhard R, Brodie J, Star M, Thorburn P, Rolfe J, Ronan M, Taylor B and Kroon F]

Scientific Consensus Statement: Land use impacts on Great Barrier Reef water quality and ecosystems

2017

Waterhouse J, Brodie J, Tracey D, Smith R, Vandergragt M, Collier C, Petus C, Baird M, Kroon F, Mann R, Sutcliffe T, Waters D and Adame F]

Scientific Consensus Statement Chapter 3: The risk from anthropogenic pollutants to Great Barrier Reef coastal and marine ecosystems

2017

Johnson JE, Brodie J and Waterhouse J]

Wastewater Pollution on Coral Reefs: Science-to-Policy Brief

2013

Maynard JA, Johnson JE, Puotinen M, van Hooidonk R, Devlin M, Lawrey E and Carrigan A]

Historic and projected future exposure of habitats in the Great Barrier Reef Marine Park to disturbances

2016

Lønborg C, Devlin M, Waterhouse J, Brinkman R, Costello P, da Silva E, Davidson J, Gunn K, Logan M, Petus C, Shaffelke B, Skuza M, Tonin H, Tracey D, Wright M and Zagorskis I]

Marine Monitoring Program: Annual Report for Inshore Water Quality Monitoring: 2014 to 2015

2016

Waterhouse J, Brodie J, Coppo C, Tracey D, da Silva E, Howley C, Petus C, McKenzie L, Lewis S, McCloskey G and Higham W]

Assessment of the relative risk of water quality to ecosystems of the eastern Cape York NRM Region, Great Barrier Reef. A report to South Cape York Catchments

2016

Johnson J, Waterhouse J, Devlin M and Hooper E]

RESCCUE North Efate Marine Ecosystem Assessment

2016

Johnson JE, Bell JD and Sen Gupta A]

Pacific Islands Ocean Acidification Vulnerability Assessment

2015

Johnson JE, Marsh H, Hamann M, Duke N, Burrows D, Bainbridge S, Sweatman H, Brodie J, Bohensky E, Butler J and Laurance S]

Tropical Research in Australia’s Torres Strait Region

2014

Welch DJ, Saunders T, Robins J, Harry A, Johnson JE, Maynard J, Saunders R, Pecl G, Sawynok B and Tobin A]

Implications of climate change on fisheries resources of northern Australia. Part 1: Vulnerability assessment and adaptations

2014

Waterhouse J, Brodie J, Tracey D, Lewis S, Hateley L, Brinkman R, Furnas M, Wolffe N, da Silva E, O’Brien D and McKenzie L]

Assessment of the relative risk of water quality to ecosystems of the Wet Tropics Region, Great Barrier Reef

2014

Waterhouse J, Maynard J, Brodie J, Lewis S, Petus C, da Silva E, O’Brien D, Coppo C and Mellors J]

Assessment of the relative risk of water quality to ecosystems of the Burnett Mary Region, Great Barrier Reef

2013

Brodie JE, Waterhouse J, Schaffelke B, Kroon F, Thorburn P, Rolfe J, Johnson J, Fabricius K, Lewis S, Devlin M, Warne M and McKenzie L]

Scientific Consensus Statement: Land use impacts on Great Barrier Reef water quality and ecosystems

2013

In: Scientific Consensus Statement 2013

Brodie J, Waterhouse J, Schaffelke B, Furnas M, Maynard J, Collier C, Lewis S, Warne M, Fabricius K, Devlin M, McKenzie L, Yorkston H, Randall L, Bennett J and Brando V]

Scientific Consensus Statement Chapter 3: Relative risks to the Great Barrier Reef from degraded water quality

2013

In: Synthesis of evidence to support the Reef WQ Scientific Consensus Statement

Johnson JE, Maynard JA, Devlin MJ, Wilkinson S, Anthony KRN, Yorkston H, Heron SF, Puotinen ML and van Hooidon R]

Scientific Consensus Statement Chapter 2: Resilience of GBR marine ecosystems & drivers of change

2008

Johnson JE]

Marine habitat assessment and impact of sediment runoff at Clarkes Cove, Whitsunday region

2008

Brodie J, Binney J, Fabricius K, Gordon I, Hoegh-Guldberg O, Hunter H, O’Reagain P, Pearson R, Quirk M, Thorburn P, Waterhouse J, Webster I and Wilkinson S]

Synthesis of evidence to support the Scientific Consensus Statement on Water Quality in the Great Barrier Reef

Journal articles

2023

Journal: Climatic Change

Johanna E. Johnson, David J. Welch, Ruben van Hooidonk, Dieter Tracey, Ganesha Chandrasa, Bianca Molinari, Deti Triani, Casandra Tania, Handoko Susanto]

Climate change implications for the Arafura and Timor Seas region: assessing vulnerability of marine systems to inform management and conservation

2021

Marine Pollution Bulletin

Devlin MJ, Lyons BP, Johnson JE and Hills JM]

The tropical Pacific Oceanscape: Current issues, solutions and future possibilities

2021

Marine Pollution Bulletin

Dutra LX, Haywood MD, Singh SS, Ferreira M, Johnson JE, Veitayaki J, Kininmonth S, Morris CW and Piovano S]

Synergies between local and climate-driven impacts on coral reefs from Pacific Island Countries and Territories: A review of issues and adaptation opportunities

2021

Ecology & Society

Thiault L, Jupiter SD, Johnson JE, Cinner JE, Jarvis RM, Heron SF, Maina JM, Marshall NA, Marshall PA and Claudet J]

Harnessing the potential of vulnerability assessments for managing social-ecological systems

2019

Proceedings of FishAdapt

Johnson JE, Monnereau I, Welch DJ, McConney P, Szuster B and Gasalla MA]

Climate change adaptation: Vulnerability and challenges facing small-scale fisheries in small islands

2018

Pacific Marine Climate Change Report Card Science Reviews

Johnson JE, Bertram I, Chin A, Moore BR, Pratchett MS, Welch DJ, Williams A, Bell JD and Govan H]

Effects of Climate Change on Fish and Shellfish Relevant to Pacific Islands, and the Coastal Fisheries they Support

2018

Pacific Marine Climate Change Report Card Science Reviews

Johnson JE, Allain V, Bell J, Lehodey P, Nicol S and Senina I]

Effects of Climate Change on Ocean Fisheries Relevant to the Pacific Islands

2018

Pacific Marine Climate Change Report Card Science Reviews

Dutra LXC, Haywood MDE, Singh SS, Ferreira M, Johnson JE, Joeli V, Kininmonth S and Morris CW]

Impacts of Climate Change on Corals Relevant to the Pacific Islands

2018

Marine Policy

Bell JD, Cisneros-Montemayor A, Hanich Q, Johnson JE, Lehodey P, Moore B, Pratchett M, Reygondeau G, Senina I, Virdin J and Wabnitz C]

Adaptations to maintain the contributions of small-scale fisheries to food security in the Pacific Islands

2016

Climate & Development

Ensor JE, Park SE, Attwood SJ, Kaminski AM and Johnson JE]

Can community-based adaptation increase resilience?

2016

Marine Policy

Johnson JE, Welch DJ, Maynard JA, Bell JD, Pecl G, Robins J and Saunders T]

Assessing and reducing vulnerability to climate change: Moving from theory to practical decision-support

2015

Ecohydrology & Hydrobiology

Waterhouse J, Brodie J, Audas D and Lewis S]

Land-sea connectivity, ecohydrology and management of the Great Barrier Reef catchment

2015

Ecosystem Services & River Basin Ecohydrology

Brodie J, Lewis S, Davis A, Bainbridge Z, O’Brien D, Waterhouse J, Devlin M and Thomas CR]

Management of Agriculture to Preserve Environmental Values of the Great Barrier Reef, Australia

2015

Conservation Letters

Maynard JA, Beeden R, Puotinen M, Johnson JE, Marshall PA, van Hooidonk R, Heron SF, Devlin M, Lawrey E, Dryden J, Ban N, Anthony K, Wachenfeld D and Planes S]

Great Barrier Reef no-take areas include a range of disturbance regimes

2015

Conservation Letters

Maynard JA, Beeden R, Puotinen M, Johnson JE, Marshall PA, van Hooidonk R, Heron SF, Devlin M, Lawrey E, Dryden J, Ban N, Anthony K, Wachenfeld D and Planes S]

Risk spreading in marine protected area zoning to account for variation in exposure to disturbance

2014

Journal of Environmental Management

Petus C, Teixeira da Silva E, Álvarez-Romero JG, Devlin MJ, Wenger A and Brodie J]

Using MODIS data for mapping of water types within flood plumes in the Great Barrier Reef, Australia: towards the production of river plume risk maps for reef and seagrass ecosystems

2014

Australasian Journal of Environmental Management

Beeden R, Maynard J, Johnson J, Dryden J, Kininmonth S and Marshall P]

No-anchoring areas reduce coral damage in an effort to build resilience in Keppel Bay, southern Great Barrier Reef

2013

Nature Climate Change

Bell JD, Ganachaud AS, Gehrke PC, Griffiths SP, Hobday AJ, Hoegh-Guldberg O, Johnson JE, Le Borgne R, Lehodey P, Lough JM, Matear RJ, Pickering TD, Pratchett MS, Sen Gupta A and Waycott M]

Mixed responses of tropical Pacific fisheries and aquaculture to climate change

2012

Climatic Change

Bell JD, Reid C, Batty MJ, Lehodey P, Rodwell L, Hobday AJ, Johnson JE and Demmke A]

Effects of climate change on tropical Pacific fisheries and aquaculture

2012

Marine Pollution Bulletin

Waterhouse J, Brodie J, Lewis S and Mitchell A]

Quantifying the sources of pollutants to the Great Barrier Reef

2012

Marine Pollution Bulletin

Brodie J, Kroon F, Schaffelke B, Wolanski E, Lewis S, Devlin M, Bainbridge Z, Waterhouse J and Davis A]

Terrestrial pollutant runoff to the Great Barrier Reef: current issues, priorities and management responses

2012

Estuarine, Coastal and Shelf Science

Brodie J and Waterhouse J]

A critical review of environmental management of the ‘not so Great’ Barrier Reef

2009

Estuarine, Coastal and Shelf Science

Devlin MJ, Barry J, Mills DK, Gowen RJ, Foden J, Sivyer D, Greenwood N, Pearce D and Tett P]

Estimating the diffuse attenuation coefficient from optically active constituents in UK marine waters

2009

Environmental Management

Maynard JA, Johnson JE, Marshall PA, Eakin CM, Goby G, Schuttenberg H and Spillman CM]

A strategic framework for responding to coral bleaching events in a changing climate

2009

Environmental Management

Keller BD, Gleason DF, McLeod E, Woodley CM, Airame S, Causey BD, Friedlander AM, Grober-Dunsmore R, Johnson JE, Miller SL and Steneck R]

Climate change, coral reef ecosystems, and management options for Marine Protected Areas

2009

Marine & Freshwater Research

Eberhard R, Robinson CJ, Waterhouse J, Parslow J, Hart B, Grayson R and Taylor B]

Adaptive management for water quality planning – from theory to practice

2009

Marine & Freshwater Research

Brodie J, Lewis S, Bainbridge Z, Mitchell A, Kroon F and Waterhouse J]

Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area

2007

Marine Pollution Bulletin

Devlin M, Best M and Haynes D]

Implementation of the Water Framework Directive in European marine waters

2007

Marine Pollution Bulletin

Devlin M, Best M, Coates D, Bresnan E, O'Boyle S, Park R, Silke J, Cusack C and Skeats J]

Establishing boundary classes for the classification of UK marine waters using phytoplankton communities

2005

Marine Pollution Bulletin

Painting SJ, Devlin MJ, Rogers SI, Mills DK, Parker ER and Rees HL]

Assessing the suitability of OSPAR EcoQOs for eutrophication vs ICES criteria for England and Wales

Books and book chapters

2021

In: Status of Coral Reefs of the World: 2020 Global Coral Reef Monitoring Network (GCRMN)

Ainley L, Alling A, Benavente D, Beyer H, Birrell C, Bonin M, Brown E, Camacho R, Cannon S, Currier K, Darling E, Doherty O, Donner S, Dulunaqio S, Eagle J, Fox M, Freiwald J, Gilbert A, Gonzalez Rivero M, Gouezo M, Guillemot N, Heintz T, Hoegh-Guldberg O, Hooper E, Houk P, Iguel J, Inès Hoamby A, Komeno RJL, Job S, Johnson J et al]

Chapter 9. Status and trends of coral reefs of the Pacific region

2020

In: Climate Change Impacts in the Pacific

Johnson JE, Allain V, Basel B, Bell JD, Chin A, Dutra LXC, Hooper E, Loubser D, Lough J, Moore BR and Nicol S]

Chapter 10: Impacts of climate change on marine resources in the Pacific Island region

2018

In: Impacts of climate change on fisheries & aquaculture

Bell JD, Allain V, Sen Gupta A, Johnson JE, Hampton J, Hobday AJ, Lehodey P, Lenton A, Moore BR, Pratchett MS, Senina I, Smith N and Williams P]

Chapter 14: Climate change impacts, vulnerabilities & adaptations: Western & Central Pacific Ocean marine fisheries.

2018

In: Status and Trends of Coral Reefs of the Pacific

Johnson JE, Hooper E, Waterhouse J, Dwyer S and Kaltavara J]

Status and Trends of Coral Reefs of the Pacific: Republic of Vanuatu

2017

In: Climate Change Impacts on Fisheries and Aquaculture: A Global Analysis

Johnson JE, Bell JD, Allain V, Hanich Q, Lehodey P, Moore B, Nicol S and Pickering T]

Chapter 11 – The Pacific Islands: Fisheries and Aquaculture and Climate Change

2012

In: Environmental Remote Sensing and Systems Analysis

Devlin M, Schroeder T, McKinna L, Brodie J, Brando V and Dekker A]

Monitoring and mapping of flood plumes in the Great Barrier Reef based on in-situ and remote sensing observations

2011

Bell JD, Johnson JE, Hobday AJ, Ganachaud A, Gehrke P, Hoegh-Guldberg O, Le Borgne R, Lehodey P, Lough J, Pickering T, Pratchett M and Waycott M]

Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change: Summary for Countries and Territories

2011

In: Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change

Bell JD, Adams TJH, Johnson JE, Hobday AJ and Sen Gupta A]

Chapter 1: The Pacific Community, fisheries, aquaculture and climate change: an introduction

2011

In: Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change

Waycott M, McKenzie L, Mellors J, Ellison J, Sheaves M, Collier C, Schwarz AM, Webb A, Johnson JE and Payri C]

Chapter 6: Vulnerability of mangrove, seagrass and intertidal sand and mud flat habitats in the tropical Pacific to climate change

2011

In: Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change

Bell JD, Reid C, Batty MJ, Allison EH, Lehodey P, Rodwell L, Pickering T, Gillett R, Johnson JE, Hobday AJ and Demmke A]

Chapter 12: Economic and social implications of climate change for contributions by fisheries and aquaculture to the Pacific Community

2009

In: Handbook of Catchment Management

Waterhouse J, Grundy M, Gordon I, Brodie J, Eberhard R and Yorkston H ]

Great Barrier Reef case study

2008

In: Preliminary Review of Adaptation Options for Climate-Sensitive Ecosystems and Resources

Keller BD, Airamé S, Causey B, Friedlander A, Gleason DF, Grober-Dunsmore R, Johnson J, McLeod E, Miller SL, Steneck RS and Woodley C]

Chapter 8: Marine Protected Areas

2007

In: Climate change and the Great Barrier Reef: a vulnerability assessment

Wachenfeld D, Johnson JE, Skeat A, Kenchington R, Marshall PA and Innes J]

Chapter 1: Introduction to the Great Barrier Reef and climate change

2007

In: Climate change and the Great Barrier Reef: a vulnerability assessment

Fabricius KE, Hoegh-Guldberg O, Johnson JE, McCook LJ and Lough J]

Chapter 17: Vulnerability of coral reefs of the Great Barrier Reef to climate change

2007

In: Climate change and the Great Barrier Reef: a vulnerability assessment

Marshall PA and Johnson JE]

Chapter 24: The Great Barrier Reef and climate change: vulnerability and management implications

Proceedings

2012

Devlin M, Brodie J, Wenger A, da Silva E, Alvarez Romero J, Waterhouse J and McKenzie L]

Chronic and acute influences on the Great Barrier Reef: Putting extreme weather conditions in context

2008

Workshop Outcomes, 10-11 March 2008, Riverglen Conference Centre, Brisbane

Waterhouse J, Lunnon R and Eberhard R (eds.)]

Research and information priorities for Great Barrier Reef water quality management: supporting Reef Plan, Reef Rescue and the Reef Water Quality Partnership Science Strategy 2008-2013